University of Cincinnati
Genome Research Institute
Department of Molecular Oncogenesis
2180 E. Galbraith Road. Lab 275D
Cincinnati, OH 45237
Phone: (513) 558-0216
Fax: (513) 558-5061

Email Ramars

Publications

Publications

1:

Mathivanan S, Ahmed M, Ahn NG, Alexandre H, Amanchy R, Andrews PC, Bader JS, Balgley BM, Bantscheff M, Bennett KL, Björling E, Blagoev B, Bose R, Brahmachari SK, Burlingame AS, Bustelo XR, Cagney G, Cantin GT, Cardasis HL, Celis JE, Chaerkady R, Chu F, Cole PA, Costello CE, Cotter RJ, Crockett D, DeLany JP, De Marzo AM, DeSouza LV, Deutsch EW, Dransfield E, Drewes G, Droit A, Dunn MJ, Elenitoba-Johnson K, Ewing RM, Van Eyk J, Faca V, Falkner J, Fang X, Fenselau C, Figeys D, Gagné P, Gelfi C, Gevaert K, Gimble JM, Gnad F, Goel R, Gromov P, Hanash SM, Hancock WS, Harsha HC, Hart G, Hays F, He F, Hebbar P, Helsens K, Hermeking H, Hide W, Hjernø K, Hochstrasser DF, Hofmann O, Horn DM, Hruban RH, Ibarrola N, James P, Jensen ON, Jensen PH, Jung P, Kandasamy K, Kheterpal I, Kikuno RF, Korf U, Körner R, Kuster B, Kwon MS, Lee HJ, Lee YJ, Lefevre M, Lehvaslaiho M, Lescuyer P, Levander F, Lim MS, Löbke C, Loo JA, Mann M, Martens L, Martinez-Heredia J, McComb M, McRedmond J, Mehrle A, Menon R, Miller CA, Mischak H, Mohan SS, Mohmood R, Molina H, Moran MF, Morgan JD, Moritz R, Morzel M, Muddiman DC, Nalli A, Navarro JD, Neubert TA, Ohara O, Oliva R, Omenn GS, Oyama M, Paik YK, Pennington K, Pepperkok R, Periaswamy B, Petricoin EF, Poirier GG, Prasad TS, Purvine SO, Rahiman BA, Ramachandran P, Ramachandra YL, Rice RH, Rick J, Ronnholm RH, Salonen J, Sanchez JC, Sayd T, Seshi B, Shankari K, Sheng SJ, Shetty V, Shivakumar K, Simpson RJ, Sirdeshmukh R, Siu KW, Smith JC, Smith RD, States DJ, Sugano S, Sullivan M, Superti-Furga G, Takatalo M, Thongboonkerd V, Trinidad JC, Uhlen M, Vandekerckhove J, Vasilescu J, Veenstra TD, Vidal-Taboada JM, Vihinen M, Wait R, Wang X, Wiemann S, Wu B, Xu T, Yates JR, Zhong J, Zhou M, Zhu Y, Zurbig P, Pandey A Human Proteinpedia enables sharing of human protein data. Nat Biotechnol. 2008 Feb;26(2):164-7. PMID: 18259167 [PubMed - indexed for MEDLINE]

2:	Amanchy R, Periaswamy B, Mathivanan S, Reddy R, Tattikota SG, Pandey A A curated compendium of phosphorylation motifs. Nat Biotechnol. 2007 Mar;25(3):285-6. PMID: 17344875 [PubMed - indexed for MEDLINE]

3:	Schlosser A, Amanchy R, Otto H Identification of tyrosine-phosphorylation sites in the nuclear membrane protein emerin. FEBS J. 2006 Jul;273(14):3204-15. PMID: 16857009 [PubMed - indexed for MEDLINE]

4:	Gandhi TK, Chandran S, Peri S, Saravana R, Amanchy R, Prasad TS, Pandey A A bioinformatics analysis of protein tyrosine phosphatases in humans. DNA Res. 2005 ;12(2):79-89. PMID: 16303740 [PubMed - indexed for MEDLINE]

5:	Amanchy R, Kalume DE, Iwahori A, Zhong J, Pandey A Phosphoproteome analysis of HeLa cells using stable isotope labeling with amino acids in cell culture (SILAC). J Proteome Res. ;4(5):1661-71. PMID: 16212419 [PubMed - indexed for MEDLINE]

6:

Harsha HC, Suresh S, Amanchy R, Deshpande N, Shanker K, Yatish AJ, Muthusamy B, Vrushabendra BM, Rashmi BP, Chandrika KN, Padma N, Sharma S, Badano JL, Ramya MA, Shivashankar HN, Peri S, Choudhury DR, Kavitha MP, Saravana R, Niranjan V, Gandhi TK, Ghosh N, Chandran S, Menezes M, Joy M, Mohan SS, Katsanis N, Deshpande KS, Raghothama C, Prasad CK, Pandey A A manually curated functional annotation of the human X chromosome. Nat Genet. 2005 Apr;37(4):331-2. PMID: 15800640 [PubMed - indexed for MEDLINE]

7:	Amanchy R, Kalume DE, Pandey A Stable isotope labeling with amino acids in cell culture (SILAC) for studying dynamics of protein abundance and posttranslational modifications. Sci STKE. 2005 Jan;2005(267):pl2. PMID: 15657263 [PubMed - indexed for MEDLINE]

8:

Peri S, Navarro JD, Kristiansen TZ, Amanchy R, Surendranath V, Muthusamy B, Gandhi TK, Chandrika KN, Deshpande N, Suresh S, Rashmi BP, Shanker K, Padma N, Niranjan V, Harsha HC, Talreja N, Vrushabendra BM, Ramya MA, Yatish AJ, Joy M, Shivashankar HN, Kavitha MP, Menezes M, Choudhury DR, Ghosh N, Saravana R, Chandran S, Mohan S, Jonnalagadda CK, Prasad CK, Kumar-Sinha C, Deshpande KS, Pandey A Human protein reference database as a discovery resource for proteomics. Nucleic Acids Res. 2004 Jan;32(Database issue):D497-501. PMID: 14681466 [PubMed - indexed for MEDLINE]

9:

Peri S, Navarro JD, Amanchy R, Kristiansen TZ, Jonnalagadda CK, Surendranath V, Niranjan V, Muthusamy B, Gandhi TK, Gronborg M, Ibarrola N, Deshpande N, Shanker K, Shivashankar HN, Rashmi BP, Ramya MA, Zhao Z, Chandrika KN, Padma N, Harsha HC, Yatish AJ, Kavitha MP, Menezes M, Choudhury DR, Suresh S, Ghosh N, Saravana R, Chandran S, Krishna S, Joy M, Anand SK, Madavan V, Joseph A, Wong GW, Schiemann WP, Constantinescu SN, Huang L, Khosravi-Far R, Steen H, Tewari M, Ghaffari S, Blobe GC, Dang CV, Garcia JG, Pevsner J, Jensen ON, Roepstorff P, Deshpande KS, Chinnaiyan AM, Hamosh A, Chakravarti A, Pandey A Development of human protein reference database as an initial platform for approaching systems biology in humans. Genome Res. 2003 Oct;13(10):2363-71. PMID: 14525934 [PubMed - indexed for MEDLINE]

10:

Karim ZA, Mukhopadhyay S, Ramars AS, Dash D Sustained stimulation of platelet thrombin receptor is associated with tyrosine dephosphorylation of a novel p67 peptide in a manner regulated by extracellular calcium. Biochim Biophys Acta. 2004 Aug;1693(2):147-57. PMID: 15313016 [PubMed - indexed for MEDLINE]

11:	Ramars AS, Mukhopadhyay S, Dash D Regulation of postaggregation events induced by protease-activated receptor 1 ligation in human platelets: evidence of differential signaling pathways. Arch Biochem Biophys. 2002 Feb;398(2):253-60. PMID: 11831857 [PubMed - indexed for MEDLINE]

12:	Mukhopadhyay S, Ramars AS, Ochs HD, Dash D Bruton's tyrosine kinase is a substrate of calpain in human platelets. FEBS Lett. 2001 Sep;505(1):37-41. PMID: 11557038 [PubMed - indexed for MEDLINE]

13:	Mukhopadhyay S, Ramars AS, Dash D Bruton's tyrosine kinase associates with the actin-based cytoskeleton in activated platelets. J Cell Biochem. 2001 ;81(4):659-65. PMID: 11329620 [PubMed - indexed for MEDLINE]